463709

Genomes sequenced


Site Sequences QC Pass Public
Wellcome Sanger Institute 289983 287655 277227
Public Health Wales (Cardiff) 37120 37099 36757
Public Health England (Colindale) 23947 22400 21861
Liverpool 21212 14381 14072
Oxford 17754 10846 10783
Norwich 15774 11458 11393
Northumbria 12243 9023 8636
Portsmouth 10278 8558 8219
Cambridge 10240 9413 9399
UCL/UCH 9790 8319 8257
Sheffield 9154 8376 8259
Nottingham 7287 6161 6134
Exeter 6232 4500 4500
Health Protection Scotland (Glasgow) 5597 5414 5414
Birmingham 4908 3481 3448
Edinburgh 4649 4239 4165
Northern Ireland 4288 4214 2228
UCLH Advanced Pathogen Diagnostics Unit 3459 2520 2520
Crick COVID19 Consortium (CCC) 3445 3237 2554
Barts Health NHS Trust 1134 1134 1096
St George's University Hospitals NHS Foundation Trust 882 725 438
Guy's and St. Thomas' NHS Foundation Trust (London) 342 341 341
UHCW/University of Warwick 171 170 168
Leeds 67 45 45

536030

Collections


417

Regions



Authors

BIRM Birmingham

University of Birmingham
Institute of Microbiology, University of Birmingham: Claire McMurray, Joanne Stockton, Samuel Nicholls, Radoslaw Poplawski, Will Rowe, Josh Quick, Nicholas Loman. University of Birmingham Testing Laboratory: Celina M Whalley, Andrew Bosworth, Charlotte Poxon, Kasun Wanigasooriya, Oliver Pickles, Mike Kidd, Alex Richter, Andrew D Beggs PHE Heartlands Lab: Husam Osman, Andrew Bosworth. Queen Elizabeth Hospital: Anna Casey

CAMB Cambridge

Department of Pathology, University of Cambridge
Aminu S. Jahun, Yasmin Chaudhry, Iliana Georgana, Myra Hosmillo, Rhys Izuagbe, William L. Hamilton, Martin D. Curran, Surendra Parmar, Ian Goodfellow

EDIN Edinburgh

Virology Department, Royal Infirmary of Edinburgh, NHS Lothian / School of Biological Sciences, University of Edinburgh
McHugh M, Dewar R, Cotton S, Gallagher A, Maloney D, Rooke S, O’Toole Á, Scher E, Hill V, McCrone JT, Colquhoun R, Yu X, Jackson B, Rambaut A, Templeton K

EXET Exeter

University of Exeter
Ben Temperton,Aaron Jeffries,Michelle Michelsen,Joanna Warwick-Dugdale,Audrey Farbos,Robyn Manley,Stephen Michell,Jane Masoli

GLAS Health Protection Scotland (Glasgow)

West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research
Ana da Silva Filipe, Natasha Johnson, Kathy Smollett, Daniel Mair, Stephen Carmichael, Alice Broos, Lily Tong, Jenna Nichols, Kyriaki Nomikou; Sarah McDonald; Richard Orton, Joseph Hughes, Sreenu Vattipally, David L Robertson; Alasdair MacLean, Rory Gunson; Sharif Shaaban, Matthew Holden; Rachel Blacow, Guy Mollett, Kathy Li, James Shepherd, Antonia Ho, Emma Thomson

GSTT Guy's and St. Thomas' NHS Foundation Trust (London)

Centre for Clinical Infection and Diagnostics Research and Genomics Innovation Unit, Guy's and St. Thomas' NHS Trust
Chloe Fisher, Luke Snell, Penny Cliff, Rahul Batra, Jonathan Edgeworth, Ali Raza Awan

LIVE Liverpool

Liverpool Clinical Laboratories
Sam Haldenby, Alistair Darby, Steve Paterson, Anita Lucaci, Julian Hiscox, M Almsaud, A Alrezaihi, Muhannad Alruwaili, Stuart D Armstrong, Jones Benjamin, Eleanor G Bentley, Anu Chawla, Jordan J Clark, Angela Cowell, Richard Eccles, Isabel García-Dorival, Matthew Gemmell, Alessandro Gerada, PKF Gilmore, Richard Gregory, Ximeng Han, Catherine Hartley, Margaret Hughes, Miren Iturriza-Gomara, James Johnson, L Luu, Jenifer Manson, Charlotte Nelson, Elaine O’Toole, Cassie Olateju, Rebekah Penrice-Randal , Lucille Rainbow, N.P Randle, Trevor Ian Robinson, Parul Sharma, Ghada T Shawli, James P Stewart, Neil Swainston, Ecaterina Vamos, Joanne Watts, Mark Whitehead, Hermione Webster

LOND UCL/UCH

University College London, Great Ormond Street Hospital for Children NHS Foundation Trust, Imperial College Healthcare NHS Trust
Sergi Castellano, Rachel Williams, Mark Kristiansen, Paola Resende Silva, Sunando Roy, Tony Brooks, Helena Tutill, Paola Niola, Patricia Dyal, Charlotte Williams, Leysa Forrest, Yasmin Panchbhaya, Jacqueline Findlay, Samuel Weeks, Julianne Brown, Kathryn Harris, Paul Randell, James Price, Alison Holmes, Judith Breuer

LOND_BART Barts Health NHS Trust

Barts Health NHS Trust
CUTINO-MOGUEL, Maria-Teresa; HARRINGTON, David; OWOYEMI, Dola; KULASEGARAN-SHYLINI, Raghavendran; BROAD, Claire; KELE, Beatrix

LOND_UCLH UCLH Advanced Pathogen Diagnostics Unit

University College London Hospital
Dr Judith Heaney, Matthew Byott, Dr Catherine Houlihan, Dr Daniel Frampton, Stuart Kirk, Dr Moira Spyer, Dr Paul Grant and Dr Eleni Nastouli

NIRE Northern Ireland

Regional Virus Laboratory, Belfast Health and Social Care Trust
Conall McCaughey, James McKenna, Tanya Curran, Susan Feeney, Alison Watt, Ciara Cox, Mairead Connor, Zoltan Molnar, David Simpson, Derek Fairley

NORT Northumbria

Northumbria University / South Tees Hospitals NHS Foundation Trust / North Cumbria Integrated Care NHS Foundation Trust / North Tees and Hartlepool NHS Foundation Trust / Newcastle Hospitals NHS Foundation Trust
Darren L Smith,Andrew Nelson,Matthew Bashton,Greg R Young,Joshua Loh,John Allan,Mohammad A Tariq,Giles S Holt,Gary Black,Wen C Yew,Lynn Dover,Paul Baker,Steve Liggett,Sarah Essex,Jane Greenaway,Debra Padgett,Clive Graham,Garren Scott,Edward Barton,Emma Swindells,Brendan Payne,Jennifer Collins,Yusri Taha,Gary Eltringham

NORW Norwich

Quadram Institute Bioscience
Dave J. Baker, Gemma L. Kay, Alp Aydin, Thanh Le-Viet, Steven Rudder, Ana P. Tedim, Anastasia Kolyva, Maria Diaz, Leonardo de Oliveira Martins, Nabil-Fareed Alikhan, Lizzie Meadows, Rachael Stanley, Ngozi Elumogo, Muhammed Yasir, Nicholas M. Thomson, Alexander J Trotter, Rachel Gilroy, Samuel Bloomfield, Claire Stuart, Andrew Bell, Reenesh Prakash, Samir Dervisevic, Alison E. Mather, John Wain, Mark Webber, Andrew J. Page, Justin O’Grady

NOTT Nottingham

Queens Medical Centre, Clinical Microbiology Department / DeepSeq Nottingham
Gemma Clark, Wendy Smith, Manjinder Khakh, Vicki M Fleming, Michelle M Lister, Hannah Howson-Wells, Jonathan Ball, Timothy Byaruhanga, Jayasree Dey, Emily Park, Jack Hill, Patrick McClure, Joseph Chappell, Theocharis Tsoleridis, Nadine Holmes, Matthew Carlisle, Christopher Moore, Fei Sang, Johnny Debebe, Victoria Wright, Matthew Loose

OXON Oxford

Oxford Viromics, NDM, University of Oxford; Oxford University Hospitals; Basingstoke and North Hampshire Hospital
Tanya Golubchik, David Bonsall, George Macintyre, Amy Trebes, Mariateresa de Cesare, Catrin Moore, Alex Mobbs, Anita Justice, Robert Shaw, Monique Andersson, Timothy Peto, Emma Wise, Nathan Moore, Jessica Lynch, Nick Cortes, Matilde Mori, Stephen Kidd, David Buck, John Todd, Christophe Fraser

PHEC Public Health England (Colindale)

Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
PHE Covid Sequencing Team

PHWC Public Health Wales (Cardiff)

Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit
Catherine Moore, Johnathan Evans, Laura Gifford, Malorie Perry, Simon Cottrell, Angela Marchbank, Alec Birchley, Alexander Adams, Amy Gaskin, Bree Gatica-Wilcox, Jason Coombes, Joel Southgate, Lauren Gilbert, Lee Graham, Nicole Pacchiarini, Sara Kumziene-Summerhayes, Sarah Taylor, Sophie Jones, Sara Rey, Matthew Bull, Joanne Watkins, Sally Corden, Tom Connor

PORT Portsmouth

Centre for Enzyme Innovation, University of Portsmouth / Translational Research Laboratory, Portsmouth Hospitals NHS Trust
Angela Beckett,Salman Goudarzi,Christopher Fearn,Kate Cook,Katie Loveson,Sharon Glaysher,Scott Elliott,Samuel Robson

SGUH St George's University Hospitals NHS Foundation Trust

St George's University Hospitals NHS Foundation Trust
Cassie Pope, Joshua Taylor, NgeeKeong Tan, Ken Laing, Irene Monahan, Adam Witney

SHEF Sheffield

Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust/Department of Infection, Immunity and Cardiovascular Disease, The Medical School, University of Sheffield
Thushan de Silva, Matthew Parker, Nikki Smith, Adri Angyal, Rebecca Brown, Luke Green, Rachel Tucker, Paul Parsons, Danielle Groves, Katie Johnson, Laura Carrilero, Alex Keeley, Dave Partridge, Matthew Wyles, Benjamin Lindsey, Mehmet Yavuz, Mohammad Raza, Cariad Evans

TFCI Crick COVID19 Consortium (CCC)

Bioinformatics and Biostatistics Lab, Advanced Sequencing Facility
Aengus Stewart,Jerome Nicod,Chelsea Sawyer,Laura Cubitt,Harshil Patel,Margaret Crawford

WARK UHCW/University of Warwick

UHCW / University of Warwick
Richard Stark, Chrystala Constantinidou, Meera Unnikrishnan, Laura Baxter, Jeff Cheng, Grace Taylor-Joyce, Hannah Elizabeth Bridgewater, Lucy Frost, Sarojini Pandey, Paul Brown, Tauqeer Alam, Sascha Ott, Dimitris Grammatopoulos

WSFT Western Sussex Hospitals NHS Foundation Trust

Department of Medical Microbiology, St Richard's Hospital
Manasa MUTINGWENDE,Michelle ERKIERT,Paul RANDELL,Sarah LOWDON,Olga PODPLOMYK,Jonathan LEWIS

Requests

_api_v2_artifact_library_add_
_api_datatable_biosample_
_api_v2_process_sequencing_get2_
_api_v2_artifact_biosample_update_
_api_v2_pag_accession_add_
_api_v2_artifact_file_add_
_api_v3_mdv_
_api_v2_artifact_biosample_add_
_api_v2_meta_qc_add_
_api_v2_pag_qc_get_
_api_v2_process_sequencing_add_
_api_datatable_pag_
_api_v2_majora_summary_get_
_api_v2_process_sequencing_get_
_api_v2_artifact_biosample_query_validity_
_api_v2_meta_metric_add_
_api_v2_majora_task_get_
_api_v2_group_pag_suppress_
_api_v2_artifact_biosample_get_
_api_v3_
_api_v2_meta_tag_add_


The Majora artifact metadata system was built by Sam Nicholls at the University of Birmingham for the COVID-19 Genomics UK Consortium.